You can put any carrier into any 8.8 housing but there are a few differences that must be looked at. If you put the 31 spline carrier into an existing 28 spline carrier you will need to swap to 31 spline axles. Since I have an IRS I see no need to move up to 31 spline inners when the outers will still be 28 spline. The IRS has spider side gears that have a groove cut into them for the circlips. If you are running an open carrier IRS & are swapping in another open carrier from a solid axle you can take 1 of 6 routes. You can put the replacement carrier in doing nothing & put your axle shafts in doing nothing. This will for the most part lock your axle shafts into the carrier that will be extremely difficult to remove for future service.
You can do nothing to the carrier & remove the circlips from the axle shafts. I have read of people running many passes down the track with no issues BUT I do not recommend this. For the inner CV joint to operate properly the cup portion needs to be locked into position. The next option is to simply use only the ring & pinion gear from the replacement. That is pretty straight forward. You could also swap in the spider gears from the old carrier into the replacement carrier. This is not recommended by all I read yet I fail to understand why. You are putting the full set in which are a matched set. The final option would be to have the groove machined into the side gears. You could also buy the IRS gears new for the replacement carrier.
These options change when moving from an open carrier IRS to a Traction Lock carrier from a solid axle. The spider gears are different so the option of using the old spider gears is not an option. Every other option remains. You can also buy aftermarket units for just over $400. Naturally moving from IRS to IRS you need to modify nothing. Same applies for solid axle to solid axle. The 8.8 came with almost any gear ratio you could desire. I am looking for 3.55 for my personal application. They came in Ranger trucks in both open & Limited Slip carriers. I will be looking for the Limited Slip version. I then plan on having the groove machined into the spider gears. This will give me a quicker takeoff but also increase my rpm level at highway speeds.
When working with the IRS the Mercury & Ford versions have a cast housing with an aluminum cover. The Lincoln version came with an aluminum housing & cover making for a slightly lower weight overall. I have also located a Lincoln housing which I will be swapping into my truck with the gear change. Since I also plan on moving up to a thicker anti sway bar & heavier axleshafts I expect to end up back at the same overall weight as I currently have.
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Reading the rear end tag is pretty straight forward on a Ford. In this image you will see 8 8 this is the indicator for 8.8. You will also see (you can't see the 3 but it is there) 3L27. This is the Limited Slip with 3.27 ratio.
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For more info regarding the 8.8 (and 7.5) rear axle you can check out this link.
http://www.therangerstation.com/tech_library/Axles.html